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ARTICLE - CITE-seq analysis of HU effects on CML cells
following HU treatment and a non-optimal response to TKI in the two patients with the highest LSC-II content. Although the small sample size precludes conclusions regarding the role of LSC-II in TKI responsiveness, these findings point towards analysis of LSC-II/LSC-I ratios in a larger number of HU-treated patients to elucidate long-term effects on CML outcome.
In conclusion, the results of this study imply that short-term HU therapy enhances erythroid progenitor cell differentia- tion and alters the characteristics of CML LSC. Hence, HU status should be considered in future analyses addressing the SPC compartment in CML.
Disclosures
No conflicts of interest to disclose.
Contributions
HK and MSN designed, performed and analyzed experiments. MSN designed and performed the bioinformatic analysis with input from HK. TSB performed the SCENIC analysis. LW provided the material from the chronic myeloid leukemia patients. HK and MSN isolated mononuclear cells from pa- tients’ samples. AM, FBT, KH, PJ and LW conceived, designed and supervised the study. HK, MSN, KH, FBT and AM wrote
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to submission.
Acknowledgments
The authors would like to acknowledge all patients and caregivers involved in the study. Figures were created with BioRender.com.
Funding
This work was supported by grants from the Swedish Re- search Council (2020-02783 to FBT and 2023-02193 to AM), the Swedish Cancer Society (21 1864 Pj to KH, 22 2388 Pj to FBT and 22 2128 Pj to AM), the Swedish state via the ALF agreement (ALFGBG-718421 to KH, ALFGBG-963642 to FBT and ALFGBG-724881 to AM), the Swedish Childhood Cancer Fund (PR2021-0015 to PJ), the Assar Gabrielsson Foundation and the Sahlgrenska Academy at the University of Gothenburg. The authors received research funding in the form of free reagents from BD Biosciences within the BD Multiomics Alliance.
Data-sharing statement
CITE-sequencing expression data are available online in a Zenodo repository (10.5281/zenodo.12580559). R codes are available upon request. For fastq files, please contact anna. martner@gu.se.
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